Marl Prairie Indicator Scores Model & Slough Vegetation Indicator Scores Model Combined Change Log

• Update for Java 11
• Move Software Requirements to README.txt file
• Update to supporting libraries that have been migrated to Java 11
• Add javax.annotation to dependencies
• Update org.eclipse.jdt.core.prefs and org.eclipse.jdt.ui.prefs for Java 11 and warn on missing javadocs for private visibility

• Library updates (some may not apply):
• edu.ucar.unidata.netcdf;bundle-version="5.3.3",
• gov.usgs.jem.cerp.netcdf;bundle-version="3.0.0",
• gov.usgs.jem.cerp.netcdf.ug;bundle-version="3.0.0",
• gov.usgs.jem.spatial.model;bundle-version="2.0.0",
• gov.usgs.jem.spatial.expressions;bundle-version="2.0.0",
• gov.usgs.jem.hydro.processing;bundle-version="2.0.0",
• gov.usgs.jem.netcdf.depthcreator.ui;bundle-version="2.0.0",
• gov.usgs.jem.netcdf.ncmlcreator.ui;bundle-version="2.0.0",
• gov.usgs.jem.thredds.ui;bundle-version="2.0.0"
• Attempt to resolve the majority of compiler warnings through a combination of mechanisms:
• refactor deprecated to current usage where possible, suppress deprecation otherwise;
• add javadocs in some cases, but suppress where documentation was largely ignored or code is not otherwise actively maintained;
• suppress or address other compiler warnings (e.g. resource; unused)

• guava;bundle-version="29.0.0",
• com.google.auto.value;bundle-version="1.7.2",
• org.apache.commons.csv;bundle-version="1.8.0",
• org.geotools.plugin;bundle-version="23.0.0",
• edu.ucar.unidata.netcdf;bundle-version="5.1.0",
• gov.usgs.jem.cerp.netcdf;bundle-version="2.0.0",
• org.joda.time;bundle-version="2.10.3",
• org.apache.httpcomponents;bundle-version="4.5.12"

• Add an option to the headless options, -rsm-polygon-file, and also the UI to be able to specify the shapefile to use when generating the output shapefile.

• Earlier checking (and warning) of malformed return periods CSV file
• Added support for optional hydrometrics input CSVs. Return periods and hydrometrics are calculated only if the hydrometrics are not given.
• Removed dependency on RSM Cell IDs in target return periods file.
• Added UI Validation and updated the parameters xml saving and loading to include the optional hydrometrics.

• Update to allow headless execution (see --headless --help)

• Combine shared code from MP & SV codebases into common plug-in, taking more recent bug fixes & changes from MP

• Update library dependencies
• Update to build using Maven & Tycho

• Changed type of max nesting dry days return period output metric from int to float.
• Changed type of max nesting dry days target return period input metric from int to float.
• Updated ProcessHydro to set proper fill values in NC header based on variable data type.

• Updated code to use generic gov.usgs.jem.mail plug-in for sending bug reports and enhancement requests.
• Added 32-bit .bmp launching icons.
• Updated required bundles, imported packages, features for changes related to gov.usgs.jem.internal,

gov.usgs.jem.mail

• Initial version of the application bundled as a jar with a Java Swing GUI
• Starting from Marl Prairie v2.2.0 code base.

• Moved baseline depth file to parameters tab, target return periods by cell number panel.
• Require baseline depth file only when specifying target return periods by cell number.
• Removed the term "alternative" from the one required depth file.
• Removed baseline file prefix and made "alternative" depth file prefix optional.
• Re-structured the parameters XML file to reflect new UI changes.
• Auto-create parameters.xml file in output folder at start of run to give context to output data.
• Auto-delete baseline files when specifying target return periods by cell number.
• Updated progress feedback.

• Removed calculation of percent improvement scores.
• Changed default lower bounding RSM cell from 2711 to 2712.
• Switched default return period type to file and bundled default CSV with application.

• Final scores now automatically joined to RSM cells and output to new shapefile.
• Improved detection of time range available in both input hydro files.
• Refactored code base to prepare for creation of similar Slough Vegetation model.
• Improved detection in input hydro data sets of years with enough data for 15-month "annual" cycle.
• Fixed incorrect year reporting bug in hydrometrics progress monitoring code.
• Updated help documentation and included link to draft eco design doc & user guide.

• Changed NetCDF output time unit from years to days to enable accurate timestamps
• Accounted for leap years when using discontinuous hydroperiod to calculate return periods.

Values scaled down to 365-day year: (x / 366) * 365.

• Included option in parameters tab to supply target return periods by file instead of using baseline return periods.

• P2 update system added
• Interface updated with new parameters tab for smaller screen footprint
• Addition of key bindings for menu items
• Addition of bug reports and enhancement requests via email.
• Minor bug fixes

• Converted to cross-platform executable using Eclipse RCP, updated GUI
• Includes help documentation
• Improved run time
• Now uses CERP NetCDF libraries

• Initial version of the application bundled as a jar with a Java Swing GUI